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Spatial heterogeneity in methane (CH 4 ) flux requires a reliable upscaling approach to reach accurate regional CH 4 budgets in the Arctic tundra. In this study, we combined the CLM-Microbe model with three footprint algorithms to scale up CH 4 flux from a plot level to eddy covariance (EC) tower domains (200 m × 200 m) in the Alaska North Slope, for three sites in Utqiaġvik (US-Beo, US-Bes, and US-Brw), one in Atqasuk (US-Atq) and one in Ivotuk (US-Ivo), for a period of 2013–2015. Three footprint algorithms were the homogenous footprint (HF) that assumes even contribution of all grid cells, the gradient footprint (GF) that assumes gradually declining contribution from center grid cells to edges, and the dynamic footprint (DF) that considers the impacts of wind and heterogeneity of land surface. Simulated annual CH 4 flux was highly consistent with the EC measurements at US-Beo and US-Bes. In contrast, flux was overestimated at US-Brw, US-Atq, and US-Ivo due to the higher simulated CH 4 flux in early growing seasons. The simulated monthly CH 4 flux was consistent with EC measurements but with different accuracies among footprint algorithms. At US-Bes in September 2013, RMSE and NNSE were 0.002 μmol m −2  s −1 and 0.782 using the DF algorithm, but 0.007 μmol m −2  s −1 and 0.758 using HF and 0.007 μmol m −2  s −1 and 0.765 using GF, respectively. DF algorithm performed better than the HF and GF algorithms in capturing the temporal variation in daily CH 4 flux each month, while the model accuracy was similar among the three algorithms due to flat landscapes. Temporal variations in CH 4 flux during 2013–2015 were predominately explained by air temperature (67–74%), followed by precipitation (22–36%). Spatial heterogeneities in vegetation fraction and elevation dominated the spatial variations in CH 4 flux for all five tower domains despite relatively weak differences in simulated CH 4 flux among three footprint algorithms. The CLM-Microbe model can simulate CH 4 flux at both plot and landscape scales at a high temporal resolution, which should be applied to other landscapes. Integrating land surface models with an appropriate algorithm provides a powerful tool for upscaling CH 4 flux in terrestrial ecosystems. 

Urbanization has caused environmental changes, such as urban heat islands (UHIs), that affect terrestrial ecosystems. However, how and to what extent urbanization affects plant phenology remains relatively unexplored. Here, we investigated the changes in the satellite-derived start of season (SOS) and the covariation between SOS and temperature ( R T ) in 85 large cities across the conterminous United States for the period 2001–2014. We found that 1) the SOS came significantly earlier (6.1 ± 6.3 d) in 74 cities and R T was significantly weaker (0.03 ± 0.07) in 43 cities when compared with their surrounding rural areas ( P < 0.05); 2) the decreased magnitude in R T mainly occurred in cities in relatively cold regions with an annual mean temperature <17.3 °C (e.g., Minnesota, Michigan, and Pennsylvania); and 3) the magnitude of urban−rural difference in both SOS and R T was primarily correlated with the intensity of UHI. Simulations of two phenology models further suggested that more and faster heat accumulation contributed to the earlier SOS, while a decrease in required chilling led to a decline in R T magnitude in urban areas. These findings provide observational evidence of a reduced covariation between temperature and SOS in major US cities, implying the response of spring phenology to warming conditions in nonurban environments may decline in the warming future. 

Satellite‐derived sun‐induced chlorophyll fluorescence (SIF) has been increasingly used for estimating gross primary production (GPP). However, the relationship between SIF and GPP has not been well defined, impeding the translation of satellite observed SIF to GPP. Previous studies have generally assumed a linear relationship between SIF and GPP at daily and longer time scales, but support for this assumption is lacking. Here, we used the GPP/SIF ratio to investigate seasonal variations in the relationship between SIF and GPP over the Northern Hemisphere (NH). Based on multiple SIF products and MODIS and FLUXCOM GPP data, we found strong seasonal hump‐shaped patterns for the GPP/SIF ratio over northern latitudes, with higher values in the summer than in the spring or autumn. This hump‐shaped GPP/SIF seasonal variation was confirmed by examining different SIF products and was evident for most vegetation types except evergreen broadleaf forests. The seasonal amplitude of the GPP/SIF ratio decreased from the boreal/arctic region to drylands and the tropics. For most of the NH, the lowest GPP/SIF values occurred in October or September, while the maximum GPP/SIF values were evident in June and July. The most pronounced seasonal amplitude of GPP/SIF occurred in intermediate temperature and precipitation ranges. GPP/SIF was positively related to temperature in the early and late parts of the growing season, but not during the peak growing months. These shifting relationships between temperature and GPP/SIF across different months appeared to play a key role in the seasonal dynamics of GPP/SIF. Several mechanisms may explain the patterns we observed, and future research encompassing a broad range of climate and vegetation settings is needed to improve our understanding of the spatial and temporal relationships between SIF and GPP. Nonetheless, the strong seasonal variation in GPP/SIF we identified highlights the importance of incorporating this behavior into SIF‐based GPP estimations.

 

Transitioning across biological scales is a central challenge in land surface models. Processes that operate at the scale of individual leaves must be scaled to canopies, and this is done using dedicated submodels. Here, we focus on a submodel that prescribes how light and nitrogen are distributed through plant canopies. We found a mathematical inconsistency in a submodel implemented in the Community and Energy Land Models (CLM and ELM), which incorporates twigs, branches, stems, and dead leaves in nitrogen scaling from leaf to canopy. The inconsistency leads to unrealistic (physically impossible) values of the nitrogen scaling coefficient. The mathematical inconsistency is a general mistake, that is, would occur in any model adopting this particular submodel. We resolve the inconsistency by allowing distinct profiles of stems and branches versus living leaves. We implemented the updated scheme in the ELM and find that the correction reduces global mean gross primary production (GPP) by 3.9 Pg C (3%). Further, when stems and branches are removed from the canopy in the updated model (akin to models that ignore shading from stems), global GPP increases by 4.1 Pg C (3.2%), because of reduced shading. Hence, models that entirely ignore stem shading also introduce errors in the global spatial distribution of GPP estimates, with a strong signal in the tropics, increasing GPP there by over 200 g C m⁻² yr⁻¹. Appropriately incorporating stems and other nonphotosynthesizing material into the light and nitrogen scaling routines of global land models, will improve their biological realism and accuracy.

 

Simulations of the land surface carbon cycle typically compress functional diversity into a small set of plant functional types (PFT), with parameters defined by the average value of measurements of functional traits. In most earth system models, all wild plant life is represented by between five and 14 PFTs and a typical grid cell (≈100 × 100 km) may contain a single PFT. Model logic applied to this coarse representation of ecological functional diversity provides a reasonable proxy for the carbon cycle, but does not capture the non‐linear influence of functional traits on productivity. Here we show through simulations using the Energy Exascale Land Surface Model in 15 diverse terrestrial landscapes, that better accounting for functional diversity markedly alters predicted total carbon uptake. The shift in carbon uptake is as great as 30% and 10% in boreal and tropical regions, respectively, when compared to a single PFT parameterized with the trait means. The traits that best predict gross primary production vary based on vegetation phenology, which broadly determines where traits fall within the global distribution. Carbon uptake is more closely associated with specific leaf area for evergreen PFTs and the leaf carbon to nitrogen ratio in deciduous PFTs.

 

Spatial heterogeneities in soil hydrology have been confirmed as a key control on CO₂and CH₄fluxes in the Arctic tundra ecosystem. In this study, we applied a mechanistic ecosystem model, CLM‐Microbe, to examine the microtopographic impacts on CO₂and CH₄fluxes across seven landscape types in Utqiaġvik, Alaska: trough, low‐centered polygon (LCP) center, LCP transition, LCP rim, high‐centered polygon (HCP) center, HCP transition, and HCP rim. We first validated the CLM‐Microbe model against static‐chamber measured CO₂and CH₄fluxes in 2013 for three landscape types: trough, LCP center, and LCP rim. Model application showed that low‐elevation and thus wetter landscape types (i.e., trough, transitions, and LCP center) had larger CH₄emissions rates with greater seasonal variations than high‐elevation and drier landscape types (rims and HCP center). Sensitivity analysis indicated that substrate availability for methanogenesis (acetate, CO₂ + H₂) is the most important factor determining CH₄emission, and vegetation physiological properties largely affect the net ecosystem carbon exchange and ecosystem respiration in Arctic tundra ecosystems. Modeled CH₄emissions for different microtopographic features were upscaled to the eddy covariance (EC) domain with an area‐weighted approach before validation against EC‐measured CH₄fluxes. The model underestimated the EC‐measured CH₄flux by 20% and 25% at daily and hourly time steps, suggesting the importance of the time step in reporting CH₄flux. The strong microtopographic impacts on CO₂and CH₄fluxes call for a model‐data integration framework for better understanding and predicting carbon flux in the highly heterogeneous Arctic landscape.